Article Text

Download PDFPDF
How to use acylcarnitine profiles to help diagnose inborn errors of metabolism
  1. S Santra,
  2. C Hendriksz
  1. Department of Clinical Inherited Metabolic Disorders, Birmingham Children's Hospital, Birmingham, UK
  1. Correspondence to Dr Saikat Santra, Department of Clinical Inherited Metabolic Disorders, Birmingham Children's Hospital, Steelhouse Lane, Birmingham B4 6NH, UK; saikat.santra{at}

Statistics from

Request Permissions

If you wish to reuse any or all of this article please use the link below which will take you to the Copyright Clearance Center’s RightsLink service. You will be able to get a quick price and instant permission to reuse the content in many different ways.

Inborn errors of metabolism are a heterogeneous group of conditions which frequently cause diagnostic difficulties due to their wide range of presenting features. Because many of these disorders overlap considerably in their presentation, a clinical suspicion of metabolic disease often leads to the taking of a “first line metabolic screen”, which will typically include all or a combination of the following:

  • ▶. blood for ammonia and lactate measurement

  • ▶. urine for organic acid analysis ± glycosaminoglycans

  • ▶. blood for amino acids

  • ▶. blood for acylcarnitine analysis.

This article is intended to aid the non-metabolic specialist in understanding the method and rationale for measuring acylcarnitines when investigating children with suspected inborn errors of metabolism and help one appreciate what it does, and more importantly does not, tell about a patient. It is not intended to be a substitute for close communication with one's local metabolic laboratory!

Biochemical basis

Carnitine is a small intracellular molecule, which facilitates the transport of larger molecules, especially fatty acids, across cellular compartments. Fatty acid molecules (esterified to coenzyme A) esterify onto the carnitine molecule, as shown in fig 1, to form an acylcarnitine species.

Figure 1

The structure of carnitine and the formation of acylcarnitines.

The resulting acylcarnitine molecule can then be transported across membranes using enzyme systems that recognise the carnitine moiety to facilitate transfer, such as the carnitine palmitoyl transferase shuttle illustrated below. The carnitine moiety is then again swapped for coenzyme A within the mitochondrion and the carnitine recycled back to the cytosol (fig 2).

Figure 2

The carnitine shuttle.

The ability of carnitine to esterify to larger organic molecules underlies the basis of its use in diagnosing inborn errors of metabolism. For example, an enzyme defect in the β-oxidation of fatty acids inside the mitochondrion will lead to a rise in fatty acyl-coenzyme A molecules of …

View Full Text


  • Competing interests None.

  • Provenance and peer review Commissioned; externally peer reviewed.